STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3441KEGG: sco:SCO7121 secreted protein. (200 aa)    
Predicted Functional Partners:
Krad_0367
Hypothetical protein.
  
    0.613
Krad_2287
KEGG: mva:Mvan_5809 conserved hypothetical protein.
  
    0.588
Krad_3442
PFAM: GCN5-related N-acetyltransferase; KEGG: dvl:Dvul_0757 GCN5-related N-acetyltransferase.
  
    0.550
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: lxx:Lxx12370 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.540
Krad_2729
PFAM: regulatory protein LuxR; KEGG: sco:SCO7173 transcriptional regulator.
 
     0.535
Krad_2220
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: lxx:Lxx14700 NAD dependent epimerase/dehydratase.
  
     0.515
Krad_2115
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: mav:MAV_0588 oxidoreductase.
  
     0.480
Krad_2323
PFAM: regulatory protein LuxR; KEGG: msm:MSMEG_6828 transcriptional regulator.
 
     0.468
Krad_3440
KEGG: cgb:cg1527 hypothetical protein.
       0.468
Krad_2311
PFAM: regulatory protein LuxR; KEGG: msm:MSMEG_6828 transcriptional regulator.
 
    0.453
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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