STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3466PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sma:SAV2095 putative beta-galactosidase. (968 aa)    
Predicted Functional Partners:
Krad_3471
PFAM: glycoside hydrolase clan GH-D; KEGG: aau:AAur_3362 alpha-galactosidase (melibiase).
 
 
 0.952
Krad_3464
KEGG: blo:BL0177 possible alpha-galactosidase.
 
  
  0.930
Krad_2527
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sus:Acid_4901 glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
  
  
 
0.929
Krad_0621
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.923
Krad_3640
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.923
Krad_0282
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.922
Krad_0412
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein.
   
 0.911
Krad_3970
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: aau:AAur_3310 putative beta-galactosidase.
   
 0.911
Krad_0112
PFAM: ROK family protein; KEGG: sco:SCO4285 sugar kinase.
    
 0.902
Krad_1071
PFAM: ROK family protein; KEGG: mul:MUL_0739 carbohydrate kinase.
    
 0.902
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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