STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3469PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3379 extracellular solute-binding protein. (446 aa)    
Predicted Functional Partners:
Krad_3467
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3381 binding-protein-dependent transport systems inner membrane component.
 
 0.996
Krad_3468
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_3380 binding-protein-dependent transport systems inner membrane component.
 
   0.965
Krad_3461
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_0902 binding-protein-dependent transport systems inner membrane component.
  
 0.937
Krad_3466
PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sma:SAV2095 putative beta-galactosidase.
 
     0.786
Krad_3471
PFAM: glycoside hydrolase clan GH-D; KEGG: aau:AAur_3362 alpha-galactosidase (melibiase).
 
    0.675
Krad_0974
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_0088 binding-protein-dependent transport systems inner membrane component.
 
 
 0.516
Krad_0973
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0291 putative binding protein dependent transport protein.
 
   0.485
Krad_4308
KEGG: rme:Rmet_4616 hypothetical protein.
  
     0.465
Krad_0916
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aau:AAur_0929 putative sugar ABC transportor, ATP-binding protein.
  
 
 0.460
Krad_1116
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mva:Mvan_2541 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
  
 
 0.460
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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