STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3474PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nca:Noca_3077 methyltransferase type 11. (268 aa)    
Predicted Functional Partners:
Krad_3475
PFAM: Methionine synthase vitamin-B12 independent; KEGG: cef:CE2028 putative epoxyalkane:coenzyme M transferase.
       0.773
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
     
 0.746
Krad_3477
SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro02238 hypothetical protein.
  
    0.744
Krad_1195
PFAM: metallophosphoesterase; KEGG: fal:FRAAL0280 serine/threonine protein phosphatase.
   
   0.588
Krad_3104
TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; KEGG: tfu:Tfu_2317 ATP-dependent helicase HrpA.
  
     0.486
Krad_3478
PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV7261 acetyltransferase.
       0.415
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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