STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3538PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sma:SAV5980 putative alpha-glucosidase. (546 aa)    
Predicted Functional Partners:
Krad_1295
KEGG: art:Arth_0739 1,4-alpha-glucan branching enzyme.
 0.994
Krad_3529
TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; KEGG: art:Arth_2153 4-alpha-glucanotransferase.
  
 
 0.940
Krad_1296
TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: aau:AAur_0909 trehalose synthase.
 
  
 
0.931
Krad_3471
PFAM: glycoside hydrolase clan GH-D; KEGG: aau:AAur_3362 alpha-galactosidase (melibiase).
 
 
 0.931
Krad_1118
PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase.
 
 
 0.925
Krad_2526
PFAM: glycoside hydrolase family 1; KEGG: bad:BAD_1287 beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.907
Krad_3961
Beta-glucosidase; PFAM: glycoside hydrolase family 1; KEGG: sco:SCO7558 putative beta-glucosidase.
  
 
 0.907
Krad_0408
PFAM: glycoside hydrolase family 3 domain protein.
   
 
 0.906
Krad_2530
PFAM: glycoside hydrolase family 3 domain protein; KEGG: art:Arth_1839 glycoside hydrolase, family 3 domain protein; Belongs to the glycosyl hydrolase 3 family.
   
 
 0.906
Krad_2741
PFAM: glycoside hydrolase family 3 domain protein; KEGG: bur:Bcep18194_C6710 beta-glucosidase.
   
 
 0.906
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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