STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3567Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase. (535 aa)    
Predicted Functional Partners:
Krad_1037
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: aau:AAur_0688 alpha-L-arabinofuranosidase.
  
  
 
0.926
Krad_0962
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
  
  
 
0.902
Krad_0587
PFAM: Glucuronate isomerase; KEGG: rsp:RSP_0488 uronate isomerase.
     
 0.816
Krad_3571
PFAM: aldo/keto reductase; KEGG: sus:Acid_2860 aldehyde reductase.
    
  0.800
Krad_3464
KEGG: blo:BL0177 possible alpha-galactosidase.
 
  
 0.766
Krad_0078
Arabinan endo-1,5-alpha-L-arabinosidase; PFAM: glycoside hydrolase family 43; KEGG: sco:SCO2427 secreted arabinase.
 
  
 0.758
Krad_4148
PFAM: protein of unknown function DUF1680; KEGG: tma:TM0280 hypothetical protein.
 
   
 0.742
Krad_3565
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_0935 multiple sugar transport system permease protein.
  
    0.619
Krad_3566
PFAM: extracellular solute-binding protein family 1; KEGG: tfu:Tfu_0934 putative solute binding lipoprotein.
  
    0.618
Krad_4191
KEGG: nar:Saro_2411 twin-arginine translocation pathway signal.
 
     0.617
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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