STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3646KEGG: bxe:Bxe_B1543 putative monooxygenase, DszA family. (460 aa)    
Predicted Functional Partners:
Krad_3645
TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; KEGG: tfu:Tfu_2662 adenosine deaminase.
       0.773
Krad_3647
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pac:PPA0619 transport-protein, putative permease for cytosine/purines; Belongs to the purine-cytosine permease (2.A.39) family.
       0.773
Krad_1136
PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: bch:Bcen2424_6750 acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
    0.766
Krad_3463
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mkm:Mkms_0905 acyl-CoA dehydrogenase, type 2, C-terminal domain.
 
    0.725
Krad_3644
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV771 LysR-family transcriptional regulator.
       0.538
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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