STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3647PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pac:PPA0619 transport-protein, putative permease for cytosine/purines; Belongs to the purine-cytosine permease (2.A.39) family. (485 aa)    
Predicted Functional Partners:
Krad_0796
PFAM: isochorismatase hydrolase; KEGG: pac:PPA0618 hydrolase, putative isochorismatase.
 
     0.833
Krad_3645
TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; KEGG: tfu:Tfu_2662 adenosine deaminase.
       0.783
Krad_3646
KEGG: bxe:Bxe_B1543 putative monooxygenase, DszA family.
       0.773
Krad_3644
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sma:SAV771 LysR-family transcriptional regulator.
       0.538
pyrB
TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ace:Acel_1301 aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.525
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: sma:SAV6867 putative carbamoyl-phosphate synthase large subunit.
   
    0.454
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: sco:SCO1484 carbamoyl-phosphate synthase, pyrimidine-specific, small chain; Belongs to the CarA family.
   
    0.443
Krad_1380
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV2818 putative extracellular solute-binding protein.
  
     0.415
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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