STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3651PFAM: NLPA lipoprotein; KEGG: lxx:Lxx15780 ABC-type transport systems, periplasmic component. (316 aa)    
Predicted Functional Partners:
metN
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.999
Krad_3653
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cdi:DIP0608 putative ABC transport system membrane protein.
 0.999
Krad_1497
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sma:SAV1962 putative glutamate periplasmic binding protein.
 
  
 0.776
Krad_0513
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mkm:Mkms_1225 O-acetylhomoserine/O-acetylserine sulfhydrylase.
  
    0.606
Krad_1344
O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mbo:Mb3372 O-acetylhomoserine sulfhydrylase.
  
    0.606
Krad_3362
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_0531 O-acetylhomoserine/O-acetylserine sulfhydrylase.
  
    0.606
Krad_0656
Ferredoxin--NADP(+) reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro02240 probable ferredoxin--NADP(+) reductase.
   
    0.510
Krad_3654
PFAM: periplasmic binding protein; KEGG: rha:RHA1_ro06445 ABC Fe(3+) transporter, substrate binding component.
  
  
 0.495
Krad_1082
TIGRFAM: cystathionine beta-synthase; PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: msm:MSMEG_5270 cystathionine beta-synthase.
 
  
 0.482
Krad_3649
Hypothetical protein.
       0.418
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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