STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3735PFAM: uncharacterised conserved protein UCP028846; KEGG: sco:SCO0061 hypothetical protein. (451 aa)    
Predicted Functional Partners:
Krad_3733
PFAM: glycoside hydrolase family 20; KEGG: sth:STH304 N-acetyl-beta-hexosaminidase.
 
     0.853
Krad_3734
PFAM: ROK family protein; KEGG: nca:Noca_4485 ROK family protein.
       0.774
Krad_3732
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV3020 putative sugar transporter inner membrane protein.
       0.671
Krad_3731
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5233 putative sugar transporter integral membrane protein.
       0.663
Krad_3730
PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO0531 putative sugar transporter sugar binding protein.
       0.576
Krad_3736
KEGG: tfu:Tfu_1754 hypothetical protein.
       0.516
Krad_4191
KEGG: nar:Saro_2411 twin-arginine translocation pathway signal.
  
     0.439
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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