STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3746SMART: regulatory protein LacI; KEGG: rha:RHA1_ro01365 probable transcriptional regulator. (345 aa)    
Predicted Functional Partners:
Krad_4033
PFAM: Phytanoyl-CoA dioxygenase; KEGG: sma:SAV7190 hypothetical protein.
 
     0.827
Krad_4052
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV7153 putative sugar ABC transporter ATP-binding protein.
 
 
 0.776
Krad_3745
PFAM: protein of unknown function DUF161; KEGG: nca:Noca_0415 protein of unknown function DUF161.
       0.757
Krad_4053
PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro01346 ABC sugar transporter, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.736
Krad_1853
PFAM: response regulator receiver; KEGG: rru:Rru_A2330 response regulator receiver domain protein (CheY).
   
 
 0.703
Krad_4054
KEGG: mva:Mvan_4011 periplasmic binding protein/LacI transcriptional regulator.
  
     0.584
Krad_1458
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msm:MSMEG_3601 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  
 
 0.549
Krad_3727
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sma:SAV1827 putative ABC transporter integral membrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.549
Krad_3744
PFAM: regulatory protein AsnC/Lrp family; KEGG: art:Arth_0970 transcriptional regulator, AsnC family.
     
 0.542
Krad_4156
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: rha:RHA1_ro05267 possible oxidoreductase.
 
    0.527
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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