STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3783PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rxy:Rxyl_3000 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (217 aa)    
Predicted Functional Partners:
Krad_2597
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr7566 oxidoreductase.
  
 
   0.640
Krad_3784
KEGG: aau:AAur_2658 hypothetical protein.
       0.634
Krad_3785
PFAM: TadE family protein; KEGG: aau:AAur_2659 hypothetical protein.
       0.634
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.627
Krad_2712
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3604 sorbitol utilization protein SOU2.
  
 
   0.616
Krad_2216
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mac:MA1321 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.615
Krad_2506
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gvi:gll4203 probable dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.613
Krad_1460
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: msm:MSMEG_3607 short chain dehydrogenase.
  
 
   0.561
Krad_1004
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO4764 putative dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.516
Krad_0867
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aau:AAur_0234 oxidoreductase, short chain dehydrogenase/reductase family.
  
 
   0.493
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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