STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3785PFAM: TadE family protein; KEGG: aau:AAur_2659 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Krad_3784
KEGG: aau:AAur_2658 hypothetical protein.
 
     0.955
Krad_3786
KEGG: fra:Francci3_0782 hypothetical protein.
 
     0.892
Krad_3788
PFAM: type II secretion system protein; KEGG: art:Arth_2672 type II secretion system protein.
 
     0.877
Krad_3787
PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein.
 
     0.874
Krad_3802
KEGG: art:Arth_2701 hypothetical protein.
  
     0.775
Krad_3801
KEGG: fal:FRAAL1312 hypothetical protein.
  
     0.774
Krad_3803
KEGG: fra:Francci3_0771 putative transcriptional regulator.
  
     0.762
Krad_3804
KEGG: aau:AAur_2687 hypothetical protein.
  
     0.745
Krad_3219
KEGG: nca:Noca_4053 hypothetical protein.
  
     0.738
Krad_3805
KEGG: art:Arth_2704 hypothetical protein.
  
     0.731
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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