STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3799KEGG: sco:SCO3001 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Krad_3800
KEGG: aau:AAur_1649 hypothetical protein.
 
     0.799
Krad_3007
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sma:SAV6861 DNA-binding protein.
  
     0.706
Krad_3243
PFAM: glycosyl transferase group 1; KEGG: sma:SAV6067 glycosyl transferase.
  
     0.687
Krad_3919
KEGG: sma:SAV3341 hypothetical protein.
  
     0.675
Krad_4505
KEGG: sma:SAV4307 hypothetical protein.
  
     0.620
Krad_0600
KEGG: rha:RHA1_ro04450 hypothetical protein.
  
     0.573
Krad_3061
KEGG: sco:SCO1524 hypothetical protein.
  
     0.571
Krad_3145
KEGG: rha:RHA1_ro00932 hypothetical protein.
  
     0.555
Krad_2909
Hypothetical protein; KEGG: sma:SAV6427 transcriptional regulator.
  
     0.548
Krad_3582
KEGG: sco:SCO4331 hypothetical protein.
  
     0.531
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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