STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3823Cellulose 1,4-beta-cellobiosidase; PFAM: glycoside hydrolase family 9; Carbohydrate-binding CenC domain protein; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: sco:SCO0765 secreted endoglucanase. (786 aa)    
Predicted Functional Partners:
Krad_0408
PFAM: glycoside hydrolase family 3 domain protein.
 
  
 0.924
Krad_2526
PFAM: glycoside hydrolase family 1; KEGG: bad:BAD_1287 beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
    
 0.909
Krad_3961
Beta-glucosidase; PFAM: glycoside hydrolase family 1; KEGG: sco:SCO7558 putative beta-glucosidase.
    
 0.909
Krad_2530
PFAM: glycoside hydrolase family 3 domain protein; KEGG: art:Arth_1839 glycoside hydrolase, family 3 domain protein; Belongs to the glycosyl hydrolase 3 family.
    
 0.905
Krad_2741
PFAM: glycoside hydrolase family 3 domain protein; KEGG: bur:Bcep18194_C6710 beta-glucosidase.
    
 0.905
Krad_3436
PFAM: glycoside hydrolase family 3 domain protein; KEGG: rha:RHA1_ro02947 beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
    
 0.905
Krad_4062
PFAM: protein of unknown function DUF336; KEGG: sco:SCO2848 hypothetical protein; Belongs to the UPF0303 family.
 
      0.727
Krad_0550
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: tfu:Tfu_2791 endo-1,4-beta-xylanase.
 
   
 0.715
Krad_1068
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; Carbohydrate-binding CenC domain protein; Hyalin; KEGG: sus:Acid_4394 endo-1,4-beta-xylanase.
 
   
 0.708
Krad_2548
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: ani:AN2356.2 hypothetical protein.
 
   
 0.680
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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