STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3833PFAM: protein of unknown function UPF0157; KEGG: nca:Noca_4958 protein of unknown function UPF0157. (197 aa)    
Predicted Functional Partners:
Krad_2349
PFAM: protein of unknown function UPF0157; KEGG: mma:MM0450 hypothetical protein.
  
     0.766
Krad_2751
PFAM: protein of unknown function UPF0157; KEGG: sco:SCO7215 conserved hypothetical protein.
  
     0.765
Krad_3834
PFAM: RDD domain containing protein; KEGG: nca:Noca_3913 RDD domain containing protein.
  
    0.605
Krad_3832
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ace:Acel_1489 peptidase S9, prolyl oligopeptidase active site domain protein.
       0.543
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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