STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3844KEGG: ace:Acel_0462 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Krad_1406
KEGG: aau:AAur_2444 hypothetical protein.
  
     0.725
Krad_3338
KEGG: ace:Acel_0882 hypothetical protein.
  
     0.655
Krad_3843
KEGG: sma:SAV5046 hypothetical protein.
       0.646
Krad_1311
KEGG: art:Arth_2719 hypothetical protein.
  
     0.631
Krad_3581
KEGG: fal:FRAAL6731 hypothetical protein.
  
     0.615
Krad_0008
KEGG: sma:SAV4323 hypothetical protein.
  
     0.543
Krad_1167
KEGG: art:Arth_2776 hypothetical protein.
  
     0.540
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.492
Krad_3839
Putative transcriptional regulator, RpiR family; KEGG: ace:Acel_0467 sugar isomerase (SIS).
       0.490
Krad_3841
Phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sco:SCO3028 phosphomannomutase.
       0.490
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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