STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3863PFAM: extracellular solute-binding protein family 5; KEGG: mkm:Mkms_3453 extracellular solute-binding protein, family 5. (523 aa)    
Predicted Functional Partners:
Krad_3862
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_3454 binding-protein-dependent transport systems inner membrane component.
 
 0.967
Krad_3861
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mva:Mvan_3775 binding-protein-dependent transport systems inner membrane component.
 
 0.964
Krad_3860
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: ret:RHE_PB00035 probable oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.921
Krad_3859
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: reh:H16_B0716 ABC-type transporter, ATPase component: PepT family; Belongs to the ABC transporter superfamily.
 
 0.904
Krad_0146
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_2785 ABC-transport protein, inner membrane component.
 
 0.863
Krad_0147
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2519 probable ABC-transport protein, inner membrane component.
 
 0.849
Krad_2172
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msm:MSMEG_4386 ABC transporter permease protein.
 
 0.848
Krad_2997
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_1190 binding-protein-dependent transport systems inner membrane component.
 
 0.846
Krad_2996
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gka:GK0469 dipeptide ABC transporter (permease).
 
 0.830
Krad_2171
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr1603 ABC transporter permease protein.
 
 0.806
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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