STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3865PFAM: glycosyl transferase group 1; Methyltransferase type 11; KEGG: tfu:Tfu_2522 glycosyl transferase. (666 aa)    
Predicted Functional Partners:
Krad_3866
PFAM: glycosyl transferase family 2; KEGG: fra:Francci3_0730 glycosyl transferase, family 2.
 
  
 0.939
Krad_3864
KEGG: ace:Acel_0439 hypothetical protein.
 
  
 0.920
Krad_3867
KEGG: rxy:Rxyl_1179 hypothetical protein.
     
 0.782
Krad_0013
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: rha:RHA1_ro05742 sugar transferase.
  
  
 0.682
Krad_1195
PFAM: metallophosphoesterase; KEGG: fal:FRAAL0280 serine/threonine protein phosphatase.
   
   0.592
Krad_1529
PFAM: protein of unknown function DUF1232; KEGG: tfu:Tfu_2752 hypothetical protein.
  
    0.577
Krad_3868
KEGG: art:Arth_1191 hypothetical protein.
  
  
 0.558
Krad_1179
PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: aau:AAur_2736 putative ATP-dependent DNA helicase (UvrD/REP).
  
 
 0.543
Krad_3869
PFAM: putative ammonia monooxygenase; KEGG: mva:Mvan_1609 putative ammonia monooxygenase.
       0.523
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.492
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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