STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3878PFAM: LGFP repeat protein; KEGG: nfa:nfa24370 hypothetical protein. (407 aa)    
Predicted Functional Partners:
Krad_3877
LGFP repeat protein; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; LGFP repeat protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: mav:MAV_0206 N-acetylmuramoyl-L-alanine amidase.
 
    
0.804
Krad_3879
TIGRFAM: SpoIID/LytB domain; PFAM: LGFP repeat protein; Stage II sporulation D domain protein; KEGG: ace:Acel_0423 SpoIID/LytB domain.
 
    
0.750
Krad_3875
PFAM: Protein of unknown function DUF1800; KEGG: nca:Noca_2721 hypothetical protein.
 
     0.492
Krad_3876
PFAM: protein of unknown function DUF1501; KEGG: nca:Noca_2722 protein of unknown function DUF1501.
 
     0.488
Krad_4016
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro03452 ABC sugar transporter, permease component.
  
     0.471
Krad_3650
KEGG: art:Arth_3858 uncharacterized conserved small protein-like protein.
  
     0.450
Krad_4228
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: nfa:nfa11810 hypothetical protein.
  
     0.447
Krad_4017
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro04271 ABC sugar transporter, permease component.
  
     0.434
Krad_4015
PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_0413 extracellular solute-binding protein, family 1.
  
     0.406
Krad_3873
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpa:MAP0234c oxidoreductase, short-chain dehydrogenase/reductase family.
 
     0.400
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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