STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3879TIGRFAM: SpoIID/LytB domain; PFAM: LGFP repeat protein; Stage II sporulation D domain protein; KEGG: ace:Acel_0423 SpoIID/LytB domain. (664 aa)    
Predicted Functional Partners:
Krad_3877
LGFP repeat protein; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; LGFP repeat protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: mav:MAV_0206 N-acetylmuramoyl-L-alanine amidase.
 
    
0.778
Krad_3878
PFAM: LGFP repeat protein; KEGG: nfa:nfa24370 hypothetical protein.
 
    
0.750
Krad_1412
PFAM: peptidase M23B; KEGG: aau:AAur_1502 M23 peptidase domain protein.
 
   
 0.459
Krad_2862
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: art:Arth_1867 AAA ATPase, central domain protein.
  
  
 0.431
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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