STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3901TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: msm:MSMEG_6421 transcriptional regulator. (407 aa)    
Predicted Functional Partners:
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.763
Krad_0079
PFAM: ThiJ/PfpI domain protein; KEGG: aav:Aave_1967 ThiJ/PfpI domain protein.
   
    0.731
Krad_0030
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_2526 cell envelope-related transcriptional attenuator.
 
   
0.730
Krad_2918
Putative transcriptional regulator; KEGG: tfu:Tfu_1988 putative DNA-binding protein.
  
    0.721
Krad_4012
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; KEGG: sco:SCO7307 chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family.
   
  
 0.678
Krad_4060
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: ace:Acel_1804 transcriptional regulator, GntR family.
   
  
 0.579
Krad_0959
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aau:AAur_0179 putative glyoxalase family protein.
   
    0.559
Krad_3774
PFAM: protein of unknown function DUF179; KEGG: sma:SAV5129 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.550
Krad_2933
Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.531
Krad_3900
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: aau:AAur_3170 UDP-glucose 6-dehydrogenase.
     
 0.522
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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