STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3939PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_3549 putative major facilitator superfamily (MFS) transporter. (465 aa)    
Predicted Functional Partners:
Krad_3940
PFAM: intradiol ring-cleavage dioxygenase; KEGG: fra:Francci3_0108 twin-arginine translocation pathway signal.
     
 0.711
Krad_3938
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: art:Arth_1309 transcriptional regulator, LysR family.
  
    0.668
Krad_3267
PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1720 major facilitator superfamily MFS_1.
  
    0.546
Krad_2293
PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL1857 putative MFS sugar transporter protein.
  
     0.539
Krad_2778
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5797 tetracenomycin C resistance and export protein.
  
    0.530
Krad_2720
KEGG: xfa:XF1765 drug:proton antiporter.
  
    0.492
Krad_3937
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV1992 hypothetical protein.
       0.477
Krad_2305
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO3648 transmembrane efflux protein.
  
    0.414
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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