STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3943TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase. (761 aa)    
Predicted Functional Partners:
Krad_4159
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_4; KEGG: dge:Dgeo_0380 diguanylate cyclase.
  
   0.736
Krad_3944
TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; KEGG: sma:SAV3365 putative thymidine phosphorylase.
       0.548
Krad_3945
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.548
Krad_3946
PFAM: inner-membrane translocator; KEGG: art:Arth_1140 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.548
Krad_3947
PFAM: inner-membrane translocator; KEGG: art:Arth_1139 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.548
Krad_3948
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_1138 ABC transporter related.
       0.548
Krad_0606
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: ace:Acel_1481 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
0.542
Krad_4323
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: fal:FRAAL6490 hypothetical protein.
 
 
0.531
Krad_0392
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mva:Mvan_3629 diguanylate cyclase with PAS/PAC sensor.
 
 
0.517
Krad_1678
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mva:Mvan_3629 diguanylate cyclase with PAS/PAC sensor.
 
 
0.516
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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