STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3945Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (136 aa)    
Predicted Functional Partners:
Krad_3944
TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; KEGG: sma:SAV3365 putative thymidine phosphorylase.
 
 0.999
Krad_3920
Purine nucleotide phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
 
 
 0.970
Krad_4250
PFAM: thymidine kinase; KEGG: art:Arth_1631 thymidine kinase.
 
  
 0.925
Krad_2776
PFAM: 5'-Nucleotidase domain protein; KEGG: cyb:CYB_0274 5'-nucleotidase domain/Ser/Thr protein phosphatase family protein; Belongs to the 5'-nucleotidase family.
 
  
 0.921
Krad_4241
2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sco:SCO2015 putative nucleotidase; Belongs to the 5'-nucleotidase family.
 
  
 0.918
Krad_2644
KEGG: fal:FRAAL3674 putative kinase.
    
 0.907
Krad_1905
PFAM: 5 nucleotidase deoxy cytosolic type C; KEGG: bpe:BP0294 putative 5'(3')-deoxyribonucleotidase.
     
  0.900
Krad_3946
PFAM: inner-membrane translocator; KEGG: art:Arth_1140 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.844
Krad_3947
PFAM: inner-membrane translocator; KEGG: art:Arth_1139 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.840
Krad_3948
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: art:Arth_1138 ABC transporter related.
 
  
 0.840
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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