STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_3956PFAM: ABC-1 domain protein; KEGG: gsu:GSU1088 ubiquinone biosynthesis protein AarF, putative. (552 aa)    
Predicted Functional Partners:
Krad_3957
KEGG: ani:AN3480.2 hypothetical protein.
       0.655
Krad_3954
TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: art:Arth_1129 succinate dehydrogenase, flavoprotein subunit.
 
     0.537
Krad_3955
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: aau:AAur_1244 succinate dehydrogenase, iron-sulfur subunit.
       0.464
Krad_3953
Succinate dehydrogenase hydrophobic anchor subunit-like; KEGG: art:Arth_1130 putative succinate dehydrogenase membrane subunit.
       0.433
Krad_3952
TIGRFAM: Succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: art:Arth_1131 succinate dehydrogenase, cytochrome b subunit.
       0.428
Krad_2626
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rxy:Rxyl_1285 monooxygenase, FAD-binding protein.
  
 
 0.424
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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