STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4004KEGG: sco:SCO4534 hypothetical protein. (551 aa)    
Predicted Functional Partners:
Krad_4003
KEGG: sco:SCO4536 hypothetical protein.
       0.805
Krad_4001
Hypothetical protein.
       0.773
Krad_4002
Hypothetical protein.
       0.773
Krad_4005
Hypothetical protein.
       0.773
Krad_4007
PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV7211 acetyltransferase.
  
    0.601
Krad_4006
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: aau:AAur_4068 putative NAD dependent epimerase/dehydratase family protein.
       0.530
Krad_4008
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: art:Arth_2032 SUA5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
       0.530
Krad_1710
PFAM: Transglycosylase domain protein; KEGG: lma:LmjF34.0690 hypothetical protein, conserved.
  
 
 0.489
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.424
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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