STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4026PFAM: MaoC domain protein dehydratase; KEGG: nca:Noca_2849 MaoC domain protein dehydratase. (292 aa)    
Predicted Functional Partners:
Krad_4028
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: aau:AAur_2140 putative acetyl-coa acetyltransferase (thiolase); Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.970
Krad_4027
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro05199 3-oxoacyl-[acyl-carrier-protein] reductase.
 
 0.953
Krad_4029
PFAM: regulatory protein TetR; KEGG: art:Arth_2143 transcriptional regulator, TetR family.
 
     0.856
Krad_4030
PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: tfu:Tfu_2239 hypothetical protein.
 
 0.854
Krad_3503
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: sco:SCO6026 fatty acid oxidation complex alpha-subunit.
  
 0.668
Krad_0865
PFAM: Catalase domain protein; KEGG: nfa:nfa55390 putative catalase; Belongs to the catalase family.
   
 0.586
Krad_2098
PFAM: Saccharopine dehydrogenase; KEGG: art:Arth_3626 saccharopine dehydrogenase.
  
  
 0.559
Krad_1220
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_1909 ferredoxin.
  
  
 0.556
Krad_4031
PFAM: biotin/lipoate A/B protein ligase; KEGG: sco:SCO6423 putative lipoate-protein ligase.
       0.537
Krad_4024
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro00829 short chain dehydrogenase.
  
 0.535
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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