STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBTIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ace:Acel_2065 xylulokinase. (465 aa)    
Predicted Functional Partners:
Krad_2086
PFAM: carbohydrate kinase FGGY; KEGG: rxy:Rxyl_0833 carbohydrate kinase, FGGY; Belongs to the FGGY kinase family.
 
  
 
0.925
Krad_2980
PFAM: ribulose-phosphate 3-epimerase; KEGG: aau:AAur_1824 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.925
Krad_3973
TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rha:RHA1_ro05490 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
  
 0.701
Krad_0801
PFAM: protein of unknown function DUF718; KEGG: nfa:nfa32910 hypothetical protein.
  
  
 0.645
Krad_2922
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.602
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.595
Krad_4055
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro01354 possible myo-inositol catabolism protein.
  
 
 0.536
Krad_4039
KEGG: aau:AAur_3529 hypothetical protein.
       0.481
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.474
Krad_1189
PFAM: ROK family protein; KEGG: nca:Noca_2379 ROK family protein.
 
  
 0.469
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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