STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4059PFAM: PfkB domain protein; KEGG: msm:MSMEG_4661 sugar kinase, ribokinase family protein. (325 aa)    
Predicted Functional Partners:
Krad_4057
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rha:RHA1_ro01352 myo-inositol catabolism IolB protein.
 
 0.998
Krad_4058
KEGG: rha:RHA1_ro01351 hypothetical protein.
  
 0.980
Krad_4056
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rha:RHA1_ro01353 probable acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.965
Krad_4055
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro01354 possible myo-inositol catabolism protein.
 
  
 0.900
Krad_4060
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: ace:Acel_1804 transcriptional regulator, GntR family.
 
   
 0.874
Krad_4050
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ace:Acel_1810 xylose isomerase domain protein TIM barrel.
 
  
 0.806
iolG
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
    0.767
Krad_0031
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: art:Arth_0834 inositol 2-dehydrogenase.
 
    0.710
Krad_4054
KEGG: mva:Mvan_4011 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.702
Krad_4053
PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro01346 ABC sugar transporter, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.661
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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