STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4061TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_1368 putative sugar MFS transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (490 aa)    
Predicted Functional Partners:
Krad_4050
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ace:Acel_1810 xylose isomerase domain protein TIM barrel.
 
    0.535
Krad_4062
PFAM: protein of unknown function DUF336; KEGG: sco:SCO2848 hypothetical protein; Belongs to the UPF0303 family.
       0.511
Krad_0772
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: sco:SCO4284 putative N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.497
Krad_2159
PFAM: amidohydrolase; KEGG: tfu:Tfu_2473 N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.497
iolG
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
    0.476
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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