STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4138PFAM: alpha/beta hydrolase fold; KEGG: rpd:RPD_3289 alpha/beta hydrolase fold. (268 aa)    
Predicted Functional Partners:
Krad_4139
KEGG: nfa:nfa45010 hypothetical protein.
       0.631
Krad_0418
PFAM: alpha/beta hydrolase fold.
  
     0.556
Krad_0455
PFAM: alpha/beta hydrolase fold.
  
     0.510
Krad_0728
PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO4746 lipase.
  
   
 0.468
Krad_2119
PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_6720 epoxide hydrolase.
  
     0.462
Krad_3505
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rxy:Rxyl_0375 acyl-CoA dehydrogenase-like protein.
  
   0.429
Krad_4140
KEGG: hypothetical protein.
       0.417
Krad_4141
Hypothetical protein.
       0.417
Krad_2097
PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV923 hydrolase.
  
     0.410
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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