STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4141Hypothetical protein. (138 aa)    
Predicted Functional Partners:
Krad_4140
KEGG: hypothetical protein.
       0.773
Krad_4142
PFAM: YCII-related; KEGG: aau:AAur_1545 putative YCII-related domain protein.
       0.588
Krad_4143
PFAM: protein of unknown function DUF161; KEGG: sma:SAV6929 hypothetical protein.
       0.588
Krad_4139
KEGG: nfa:nfa45010 hypothetical protein.
       0.498
Krad_4144
Putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: art:Arth_0620 transcriptional regulator, GntR family.
       0.434
Krad_4138
PFAM: alpha/beta hydrolase fold; KEGG: rpd:RPD_3289 alpha/beta hydrolase fold.
       0.417
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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