STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4154PFAM: DNA primase small subunit; KEGG: art:Arth_3426 hypothetical protein. (408 aa)    
Predicted Functional Partners:
Krad_0653
PFAM: ATP dependent DNA ligase; KEGG: rha:RHA1_ro05107 possible DNA ligase (ATP), C-terminal.
   
 0.985
ku
Ku family containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.888
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
   
 0.832
Krad_4153
PFAM: Acetamidase/Formamidase; KEGG: amidase-related protein.
       0.714
Krad_4198
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rha:RHA1_ro02178 probable DNA-(apurinic or apyrimidinic site) lyase.
 
    0.652
Krad_4151
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_5030 polar amino acid ABC transporter, inner membrane subunit.
       0.618
Krad_4152
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro01895 ABC amino acid transporter, ATP-binding component.
       0.618
Krad_4150
PFAM: extracellular solute-binding protein family 3; KEGG: rha:RHA1_ro01893 ABC amino acid transporter, periplasmic binding protein; Belongs to the bacterial solute-binding protein 3 family.
       0.541
Krad_4036
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sco:SCO0789 putative histidinol phosphatase.
 
   
 0.483
Krad_0158
DNA-formamidopyrimidine glycosylase; PFAM: Formamidopyrimidine-DNA glycolase; KEGG: sma:SAV7289 putative formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
 
     0.436
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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