STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4157PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro05268 probable hydroxypyruvate isomerase; Belongs to the hyi family. (264 aa)    
Predicted Functional Partners:
Krad_2140
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rle:RL3799 putative hydroxypyruvate isomerase; Belongs to the hyi family.
  
  
 
0.927
Krad_2146
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rha:RHA1_ro02575 probable 2-hydroxy-3-oxopropionate reductase.
  
 
 0.921
Krad_4156
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: rha:RHA1_ro05267 possible oxidoreductase.
 
    0.877
Krad_4155
PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rha:RHA1_ro01362 transcriptional regulator, LacI family.
 
     0.637
Krad_3746
SMART: regulatory protein LacI; KEGG: rha:RHA1_ro01365 probable transcriptional regulator.
 
     0.435
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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