STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4179PFAM: Ankyrin; KEGG: sco:SCO1414 ankyrin-like protein. (132 aa)    
Predicted Functional Partners:
Krad_0562
KEGG: fal:FRAAL6247 hypothetical protein; putative membrane protein.
   
 0.882
Krad_0555
Sulphate transporter; PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sco:SCO3276 integral membrane transporter.
    
 
 0.750
Krad_2727
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rha:RHA1_ro08967 dehydrogenase.
    
 0.747
Krad_3253
PFAM: Cytochrome b/b6 domain; KEGG: aau:AAur_2210 ubiquinol-cytochrome c reductase cytochrome b subunit.
    
 0.731
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.688
Krad_4406
ADP-ribosylation/Crystallin J1; PFAM: Dual specificity protein phosphatase; ADP-ribosylation/Crystallin J1; KEGG: sco:SCO0086 ribosylglycohydrolase (secreted protein).
 
 
 0.672
Krad_1514
TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sco:SCO0747 hypothetical protein.
    
 
 0.670
Krad_1244
TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; KEGG: fal:FRAAL4016 HrpA-like helicase, ATP-dependent.
    
 0.667
Krad_3104
TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; KEGG: tfu:Tfu_2317 ATP-dependent helicase HrpA.
    
 0.667
Krad_2931
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: art:Arth_2087 glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.653
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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