STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4237KEGG: lxx:Lxx14240 ABC transporter, permease protein. (201 aa)    
Predicted Functional Partners:
Krad_4235
PFAM: cobalt transport protein; KEGG: art:Arth_3864 cobalt transport protein.
 
  
 0.974
Krad_4236
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lxx:Lxx14230 ABC transporter, ATP-binding protein.
 
  
 0.965
Krad_0855
Transcriptional activator, TenA family; PFAM: TENA/THI-4 domain protein; KEGG: rha:RHA1_ro01597 possible transcriptional activator TenA.
 
  
 0.541
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
  
 0.471
Krad_4238
KEGG: fra:Francci3_1317 hypothetical protein.
       0.439
Krad_0854
TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: rle:pRL110441 putative phosphomethylpyrimidine kinase.
  
    0.425
Krad_2913
PFAM: cobalt transport protein; KEGG: nca:Noca_3351 cobalt transport protein.
  
  
 0.420
Krad_3262
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aau:AAur_2217 putative peptidase family M20/M25/M40 protein.
 
  
 0.413
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.