STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4265PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rxy:Rxyl_2834 NCS1 nucleoside transporter family. (503 aa)    
Predicted Functional Partners:
Krad_4267
TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: fal:FRAAL1416 D-hydantoinase (dihydropyrimidinase) (DHPase).
 
  
 0.919
Krad_4266
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_3555 hydrolase.
 
     0.780
Krad_2077
Allantoinase; PFAM: amidohydrolase; KEGG: art:Arth_3693 allantoinase.
 
  
 0.690
Krad_4268
PFAM: luciferase family protein; KEGG: fal:FRAAL1418 conserved hypothetical protein; putative bacterial luciferase domain.
 
     0.597
Krad_2075
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rha:RHA1_ro04506 probable xanthine dehydrogenase molybdenum binding subunit.
  
  
 0.558
Krad_2069
KEGG: rha:RHA1_ro04511 hypothetical protein.
 
   
 0.499
Krad_4264
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: msm:MSMEG_0817 LysR-family protein transcriptional regulator.
       0.468
Krad_2070
PFAM: Transthyretin; KEGG: mul:MUL_0457 hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.466
Krad_4263
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tfu:Tfu_1845 regulatory protein, LuxR:response regulator receiver.
       0.459
Krad_2079
TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; KEGG: yps:YPTB0871 N-carbamoyl-L-amino acid amidohydrolase.
 
  
 0.441
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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