STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4400PFAM: extracellular solute-binding protein family 1; KEGG: dge:Dgeo_2821 extracellular solute-binding protein, family 1. (433 aa)    
Predicted Functional Partners:
Krad_4401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0953 binding-protein-dependent transport systems inner membrane component.
 
 0.995
Krad_4402
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0952 binding-protein-dependent transport systems inner membrane component.
 
 
 0.964
Krad_0301
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6355 putative integral membrane sugar transport protein.
 
 
 0.822
Krad_0302
PFAM: binding-protein-dependent transport systems inner membrane component.
 
   0.722
Krad_4403
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: art:Arth_0504 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.
       0.682
Krad_4016
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro03452 ABC sugar transporter, permease component.
 
 
 0.643
Krad_4399
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rxy:Rxyl_0554 GntR-like protein.
 
    0.641
Krad_3461
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mkm:Mkms_0902 binding-protein-dependent transport systems inner membrane component.
 
 
 0.625
Krad_4017
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro04271 ABC sugar transporter, permease component.
 
 
 0.623
Krad_1115
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mva:Mvan_2542 binding-protein-dependent transport systems inner membrane component.
 
 
 0.616
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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