STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4404PFAM: protein of unknown function DUF214; KEGG: sco:SCO3753 putative integral membrane. (822 aa)    
Predicted Functional Partners:
Krad_4405
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3752 putative ABC transporter ATP-binding protein.
 
 
 0.952
Krad_1349
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aau:AAur_2501 putative ABC transporter, ATP-binding protein.
 
 
 0.821
Krad_1963
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV3634 putative ABC-transporter ATP-binding protein.
 
 
 0.787
Krad_1084
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdn:Sden_2367 ABC transporter related.
  
 
 0.721
Krad_1869
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_4155 ABC transporter, ATPase subunit.
  
 
 0.721
Krad_2319
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO4666 putative ABC-transporter ATP-binding protein.
  
 
 0.721
Krad_3778
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: blo:BL1277 ATP-binding protein of ABC transporter system.
  
 
 0.721
Krad_2373
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro06066 hypothetical protein.
  
     0.607
Krad_2257
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro06066 hypothetical protein.
  
     0.605
Krad_3748
KEGG: art:Arth_4108 putative secreted protein.
  
 
 0.554
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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