STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4460PFAM: Radical SAM domain protein; KEGG: bha:BH2808 spore photoproduct lyase. (360 aa)    
Predicted Functional Partners:
Krad_0815
Catalase; PFAM: manganese containing catalase; KEGG: nfa:nfa11820 putative manganese-containing catalase.
  
     0.687
Krad_3574
KEGG: sal:Sala_0445 hypothetical protein.
 
     0.603
Krad_3428
PFAM: protein of unknown function DUF181; KEGG: mma:MM1458 hypothetical protein.
  
     0.570
Krad_4461
KEGG: nca:Noca_3724 putative phosphodiesterase.
       0.549
Krad_3429
Hypothetical protein; KEGG: csa:Csal_1011 beta-lactamase-like protein.
  
     0.496
Krad_0826
KEGG: sco:SCO0844 DNA-binding protein.
 
     0.488
Krad_1794
KEGG: aau:AAur_1865 hypothetical protein.
  
     0.477
Krad_3957
KEGG: ani:AN3480.2 hypothetical protein.
  
     0.450
Krad_2861
Hypothetical protein; KEGG: mtp:Mthe_0684 carbonate dehydratase.
 
     0.445
Krad_3426
PFAM: LmbE family protein; KEGG: mma:MM2100 hypothetical protein.
 
     0.415
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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