STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4484Putative transcriptional regulator, PucR family; KEGG: sma:SAV2725 transcriptional regulator. (365 aa)    
Predicted Functional Partners:
Krad_4483
PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase.
     
 0.668
Krad_3135
KEGG: sco:SCO4525 hypothetical protein.
  
     0.666
Krad_3125
KEGG: sco:SCO4548 integral membrane protein.
  
    0.663
Krad_4079
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: nca:Noca_4625 purine catabolism PurC domain protein.
  
     0.647
Krad_3132
PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein.
  
     0.598
Krad_3133
PFAM: type II secretion system protein; KEGG: sco:SCO4527 integral membrane protein.
  
     0.593
Krad_4482
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: msm:MSMEG_5119 1-pyrroline-5-carboxylate dehydrogenase.
       0.493
Krad_0243
KEGG: mbb:BCG_2196 putative integral membrane protein.
  
   
 0.480
Krad_1511
Transcriptional regulator, TraR/DksA family; KEGG: oih:OB2328 hypothetical protein.
  
     0.456
Krad_0362
PFAM: glycosyl transferase family 39.
  
     0.451
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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