STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krad_4507PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sma:SAV4309 putative partitioning or sporulation protein. (462 aa)    
Predicted Functional Partners:
Krad_4506
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: art:Arth_4165 ParB-like partition proteins; Belongs to the ParB family.
 
 0.998
Krad_1762
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sfu:Sfum_2606 ParB-like partition proteins; Belongs to the ParB family.
 
 
 0.955
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
 
  
 0.945
Krad_1482
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: art:Arth_1454 cell divisionFtsK/SpoIIIE.
  
  
 0.761
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
 
 0.708
Krad_4509
PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: nca:Noca_4696 single-stranded nucleic acid binding R3H domain protein.
       0.680
Krad_4505
KEGG: sma:SAV4307 hypothetical protein.
       0.647
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
     
 0.587
Krad_4511
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.570
Krad_4510
PFAM: 60 kDa inner membrane insertion protein; KEGG: aau:AAur_4207 putative 60Kd inner membrane family protein.
     
 0.560
Your Current Organism:
Kineococcus radiotolerans
NCBI taxonomy Id: 266940
Other names: K. radiotolerans SRS30216 = ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149, Kineococcus radiotolerans ATCC BAA-149 = SRS30216, Kineococcus radiotolerans SRS30216, Kineococcus radiotolerans SRS30216 = ATCC BAA-149, Kineococcus-like str. SRS30216
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