STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traG1Conjugal transfer protein traG; Annotated by: sma3s; COG3505. (661 aa)    
Predicted Functional Partners:
AMG72579.1
CopG family transcriptional regulator; Annotated by: sma3s.
 
     0.881
trbE1
Conjugal transfer protein TrbE; Annotated by: sma3s; COG3451.
 
  
 0.817
virD22
Type VI secretion protein; Annotated by: sma3s; COG3843.
 
   
 0.740
trbE4
Conjugal transfer protein TrbE; Annotated by: sma3s; COG3451.
 
  
 0.734
trbE5
Conjugal transfer protein TrbE; Annotated by: sma3s; COG3451.
 
  
 0.734
trbE
Conjugal transfer protein TrbE; Annotated by: sma3s; COG3451.
 
  
 0.732
traF4
Conjugal transfer protein TraF; Annotated by: sma3s; COG4959.
 
     0.722
trbC1
Putative conjugal transfer protein TrbC; Annotated by: sma3s; COG3838.
 
   
 0.712
trbE2
Conjugal transfer protein TrbE; Annotated by: sma3s; COG3451.
 
  
 0.708
traF1
Putative conjugal transfer protein TraF; Annotated by: sma3s; COG4959.
 
     0.702
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.