STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG72789.1Secreted (Periplasmic)-like protein; Annotated by: sma3s; COG5468. (181 aa)    
Predicted Functional Partners:
AMG72790.1
DNA polymerase III subunit delta; Annotated by: sma3s; COG1466.
 
    0.936
AMG72787.1
Uncharacterized protein; Annotated by: sma3s.
 
     0.885
AMG76241.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.739
AMG75321.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.733
leuS
Leucine--tRNA ligase; Annotated by: sma3s; COG0495; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.703
AMG72724.1
TmRNA-binding small protein A; Annotated by: sma3s; COG2913.
  
     0.700
AMG74772.1
Septum formation initiator; Annotated by: sma3s.
  
     0.686
AMG76292.1
Uncharacterized protein; Annotated by: sma3s; COG5375.
  
     0.682
AMG75473.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.658
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.657
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.