STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMG72831.1Transposase; Annotated by: sma3s; COG2128. (215 aa)    
Predicted Functional Partners:
AMG72832.1
Cytosolic protein; Annotated by: sma3s; COG3631.
 
     0.924
AMG73311.1
Uncharacterized protein; Annotated by: sma3s.
  
     0.747
AMG72829.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Annotated by: sma3s; COG0346.
 
   
 0.708
AMG72833.1
Major facilitator family transporter; Annotated by: sma3s; COG2271.
 
     0.706
fadD19
3-oxocholest-4-en-26-oate--CoA ligase; Annotated by: sma3s; COG0318.
  
     0.699
AMG73988.1
Hydrolase, putative; Annotated by: sma3s; COG0596.
  
  
 0.689
AMG72830.1
Glutathione S-transferase; Annotated by: sma3s; COG0625.
 
   
 0.675
AMG73572.1
Acyl-CoA synthetase; Annotated by: sma3s; COG0318.
  
     0.637
AMG73285.1
Antibiotic biosynthesis monooxygenase; Annotated by: sma3s; COG1359.
 
    0.616
AMG73286.1
Carboxymuconolactone decarboxylase; Annotated by: sma3s; COG2128.
  
     0.581
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.