STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abgTAminobenzoyl-glutamate transporter; Annotated by: sma3s; COG2978. (512 aa)    
Predicted Functional Partners:
cocE
Antibiotic hydrolase; Annotated by: sma3s; COG2936.
       0.778
AMG72843.1
Transcriptional activator for lysine biosynthesis; Annotated by: sma3s; COG0583; Belongs to the LysR transcriptional regulatory family.
  
    0.778
AMG72840.1
TonB-dependent receptor; Annotated by: sma3s; COG4206; COG1629.
 
     0.667
AMG72510.1
Oxidoreductase (Flavoprotein); Annotated by: sma3s; COG3453; COG0446.
  
    0.488
AMG74599.1
Putative PAS/PAC sensor protein; Annotated by: sma3s; COG3852.
  
    0.463
rpmJ
50S ribosomal protein L36; Annotated by: sma3s; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.445
AMG72839.1
Poly-gamma-glutamate synthesis protein; Annotated by: sma3s; COG2843.
       0.407
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.