STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkK2Long-chain fatty acid--CoA ligase; Annotated by: sma3s; COG0318. (552 aa)    
Predicted Functional Partners:
AMG72845.1
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
  
 
  0.765
caiA
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
  
 
  0.757
acd2
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
 
 
  0.622
acd
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
 
 
  0.619
AMG76392.1
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
 
 
  0.619
AMG75996.1
Acyl-CoA dehydrogenase-like protein; Annotated by: sma3s; COG1960.
 
 
  0.614
acd4
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
  
 
  0.545
fadE
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
  
 
  0.545
AMG73465.1
Acyl-CoA dehydrogenase, middle domain protein; Annotated by: sma3s; COG1960.
  
 
  0.545
AMG73570.1
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
  
 
  0.545
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.