STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pamOCyclohexanone monooxygenase; Annotated by: sma3s; COG2072. (540 aa)    
Predicted Functional Partners:
oph
Oxidized polyvinyl alcohol hydrolase; Annotated by: sma3s; COG3509.
    
 
 0.694
AMG72865.1
AMP-dependent synthetase and ligase; Annotated by: sma3s; COG0318.
 
  
 0.610
nlhH
Lipase; Annotated by: sma3s; COG0657.
  
 0.596
AMG72864.1
Enoyl-CoA hydratase; Annotated by: sma3s; COG1024.
   
 
 0.577
AMG73451.1
Aminoglycoside phosphotransferase; Annotated by: manual blastp.
  
     0.494
AMG74973.1
Uncharacterized protein; Annotated by: sma3s; Belongs to the UPF0311 family.
 
 
 0.476
fadE.3
Acyl-CoA dehydrogenase; Annotated by: sma3s; COG1960.
  
 
 0.472
AMG75599.1
Luciferase; Annotated by: sma3s; COG2141.
 
   
 0.457
camP2
Baeyer-Villiger monooxygenase; Annotated by: sma3s; COG2141.
 
   
 0.452
AMG72853.1
Phosphoserine aminotransferase; Annotated by: sma3s; Belongs to the UPF0311 family.
 
 
 0.434
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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