STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpFCarbonate dehydratase; Annotated by: sma3s; COG0474. (901 aa)    
Predicted Functional Partners:
AMG72791.1
Na(+):H(+) antiporter; Annotated by: sma3s; COG0025.
  
 0.909
AMG72986.1
Universal stress family protein 3; Annotated by: sma3s; COG0589.
 
  
 0.860
yrbG
Na+/Ca+ antiporter, CaCA family; Annotated by: sma3s; COG0530.
  
 
 0.838
AMG72973.1
Aminoglycoside phosphotransferase; Annotated by: sma3s; COG2187; COG0645.
 
  
 0.771
cysJ
Sulfite reductase [NADPH] flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component.
    
 0.741
ndvA
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA; Annotated by: sma3s; COG1132.
  
 0.724
pfkB
Phosphofructokinase; Annotated by: sma3s; COG1105; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.692
rbbA
Multidrug ABC transporter ATP-binding protein; Annotated by: sma3s; COG1131; COG1121; COG0842.
 
 0.681
AMG74140.1
MgtC/SapB transporter; Annotated by: sma3s; COG1285.
 
 
 0.648
AMG72984.1
Universal stress protein UspA; Annotated by: sma3s; COG0589.
  
  
 0.603
Your Current Organism:
Sphingopyxis granuli
NCBI taxonomy Id: 267128
Other names: KCTC 12209, NBRC 100800, S. granuli, Sphingopyxis granuli Kim et al. 2011, Sphingopyxis sp. TFA, strain Kw07
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